PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G371300.3
Common NameB456_007G371300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 233aa    MW: 24835.6 Da    PI: 4.3673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G371300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05205228123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg+sF +   L++H +  H
  Gorai.007G371300.3 205 FPCKSCGRSFGSENALQSHSKAkH 228
                         89*****************88777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.54E-5198227No hitNo description
PROSITE profilePS5015711.011205228IPR007087Zinc finger, C2H2
SMARTSM003550.0052205228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207228IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MPLDLALHSK FELSHTWKNG SVYFTGYYVD TPQGSGSESE EELPEPIVNP VKPHATISDP  60
TTSKQVKIVE PKKAEDSSDD EDEDDTSTED EMSSEDQEPG MLVNGENESD NDTDSDEDDS  120
EEESSDEDPE TPETEKAGPS KKRSAESATK TPAPEKKAKL VTPQKTDGKK VGGHTATPHP  180
SKEARKASAT TGQVNQSAKP GGSSFPCKSC GRSFGSENAL QSHSKAKHGI AV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435157.11e-166PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBLA0A0D2SQN21e-167A0A0D2SQN2_G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.12e-15histone deacetylase 2C
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]